Demos¶
Overview¶
All PySOFI demos are displayed and stored as Jupyter Notebooks to provide an interactive analysis environment. We hope this format can help users better utilize all PySOFI processing steps and determine analysis specifications for long term reproducibility.
Here we present analysis examples (E1 - E5) for each SOFI 2.0 elements. We also provide characterizations on the bleaching corrections options(E6), the effect of data acquisition length (E8, E9), and an example of visualizing the result figures (E10). In the end, two examples on the use of PySOFI to understand cusp-artifacts and how to extend PySOFI with a MOCA module for multi-order cumulant analysis are also demonstrated (E7). In most of our example notebooks, the analysis processes are integrated through the PySOFI class except for the demonstration of noise filtration. The whole list of notebooks can be found here.