Index

A

add() (pysofi.pysofi.PysofiData method), [1] add_filtered() (pysofi.pysofi.PysofiData method), [1] ave (pysofi.pysofi.PysofiData attribute), [1]

average_image() (in module pysofi.reconstruction), [1] (pysofi.pysofi.PysofiData method), [1] average_image_with_finterp() (in module pysofi.reconstruction), [1] (pysofi.pysofi.PysofiData method), [1]

B

bleach_correct() (pysofi.pysofi.PysofiData method), [1]

block_ave_cumulants() (in module pysofi.reconstruction), [1] block_ave_moments() (in module pysofi.reconstruction), [1]

C

calc_block_moments() (in module pysofi.reconstruction), [1] calc_cumulants_from_moments() (in module pysofi.reconstruction), [1] calc_cumulants_from_moments_with_lag() (in module pysofi.reconstruction), [1] calc_moment_im() (in module pysofi.reconstruction), [1] calc_moments() (in module pysofi.reconstruction), [1] calc_moments_set() (pysofi.pysofi.PysofiData method), [1] calc_moments_with_lag() (in module pysofi.reconstruction), [1] calc_total_signal() (in module pysofi.reconstruction), [1]

calc_xc_im() (in module pysofi.reconstruction), [1] corder (pysofi.pysofi.PysofiData attribute), [1] corelucy() (in module pysofi.deconvsk), [1] correct_bleaching() (in module pysofi.reconstruction), [1] cumulants_all_blocks() (in module pysofi.reconstruction), [1] cumulants_images() (pysofi.pysofi.PysofiData method), [1] cumulants_set (pysofi.pysofi.PysofiData attribute), [1] cumulants_set_bc (pysofi.pysofi.PysofiData attribute), [1] cut_frames() (in module pysofi.reconstruction), [1]

D

deconvsk() (in module pysofi.deconvsk), [1] (pysofi.pysofi.PysofiData method), [1]

F

fbc (pysofi.pysofi.PysofiData attribute), [1] filename (pysofi.pysofi.PysofiData attribute), [1] filepath (pysofi.pysofi.PysofiData attribute), [1] filter1d_same() (in module pysofi.filtering), [1] finterp_factor (pysofi.pysofi.PysofiData attribute), [1]

finterp_image() (pysofi.pysofi.PysofiData method), [1] finterp_tiffstack() (pysofi.pysofi.PysofiData method), [1] fourier_interp_array() (in module pysofi.finterp), [1] fourier_interp_tiff() (in module pysofi.finterp), [1] ft_matrix2d() (in module pysofi.finterp), [1]

G

gauss1d_mask() (in module pysofi.masks), [1] gauss2d_mask() (in module pysofi.masks), [1]

get_dims() (pysofi.pysofi.PysofiData method), [1] get_frame() (pysofi.pysofi.PysofiData method), [1]

I

ift_matrix2d() (in module pysofi.finterp), [1]

interpolate_image() (in module pysofi.finterp), [1]

L

ldrc() (in module pysofi.ldrc), [1] (pysofi.pysofi.PysofiData method), [1]

M

med_smooth() (in module pysofi.filtering), [1] min_image() (in module pysofi.reconstruction), [1] module pysofi pysofi.deconvsk, [1] pysofi.filtering, [1] pysofi.finterp, [1] pysofi.ldrc, [1] pysofi.masks, [1] pysofi.pysofi, [1] pysofi.reconstruction, [1]

moment_im_with_finterp() (in module pysofi.reconstruction), [1] moment_image() (pysofi.pysofi.PysofiData method), [1] moments_all_blocks() (in module pysofi.reconstruction), [1] moments_set (pysofi.pysofi.PysofiData attribute), [1] moments_set_bc (pysofi.pysofi.PysofiData attribute), [1] morder (pysofi.pysofi.PysofiData attribute), [1] morder_finterp_lst (pysofi.pysofi.PysofiData attribute), [1] morder_lst (pysofi.pysofi.PysofiData attribute), [1]

N

n_frames (pysofi.pysofi.PysofiData attribute), [1]

noise_filter1d() (in module pysofi.filtering), [1]

O

otf2psf() (in module pysofi.deconvsk), [1]

P

psf2otf() (in module pysofi.deconvsk), [1] pysofi module pysofi.deconvsk module, [1] pysofi.filtering module, [1] pysofi.finterp module, [1]

pysofi.ldrc module, [1] pysofi.masks module, [1] pysofi.pysofi module, [1] pysofi.reconstruction module, [1] PysofiData (class in pysofi.pysofi), [1]

R

richardson_lucy() (in module pysofi.deconvsk), [1]

S

sorted_k_partitions() (in module pysofi.reconstruction), [1]

X

xdim (pysofi.pysofi.PysofiData attribute), [1]

Y

ydim (pysofi.pysofi.PysofiData attribute), [1]

Z

zero_pad() (in module pysofi.deconvsk), [1]